Basic Information
Locus ID:
Oco02G014170
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
phosphatase 2A 55 kDa regulatory subunit B'
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 17108222 | 17114820 | + | Oco02G014170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 56,765.09 Da | 55.52 | 74.76 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 225 | 261 | 0.11 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 52 | 506 | 5.8E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 48 | 180 | 4.5E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 206 | 507 | 5.5E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 222 | 261 | 0.51 | IPR001680 |
| SMART | SM00320 | WD40_4 | 44 | 79 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 117 | 157 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 272 | 312 | 7.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 455 | 512 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 369 | 130.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 24 | 513 | 7.8E-199 | IPR000009 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 231 | 245 | - | IPR018067 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 117 | 131 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 133 | 161 | 2.2E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 482 | 511 | 2.2E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 318 | 345 | 2.2E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 104 | 132 | 2.2E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 289 | 317 | 2.2E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 261 | 288 | 2.2E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 233 | 260 | 2.2E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 58 | 78 | 2.2E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 374 | 399 | 2.2E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 346 | 373 | 2.2E-155 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 400 | 426 | 2.2E-155 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_052151981.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Oryza glaberrima] | 0 |
| A2X2K3 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica OX=39946 GN=OsI_006296 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D9YBC2 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Oryza glumipatula OX=40148 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology