Basic Information
Locus ID:
Oco02G012490
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 15258326 | 15263545 | + | Oco02G012490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 61,820.62 Da | 58.12 | 74.34 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 228 | 357 | 3.36671E-62 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 33 | 202 | 4.2E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 239 | 348 | 2.6E-33 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 81 | 365 | 5.7E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 10 | 219 | 1.0E-77 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 220 | 388 | 8.4E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 28 | 231 | 1.9E-62 | IPR014001 |
| SMART | SM00490 | helicmild6 | 268 | 348 | 8.4E-35 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 40 | 214 | 30.521877 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 243 | 387 | 25.412273 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 160 | 168 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 564 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_015699300.1 | DEAD-box ATP-dependent RNA helicase 40 isoform X2 [Oryza brachyantha] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1E2M2 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_027655 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology