Basic Information
Locus ID:
Oco02G012270
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Protein kinase and PP2C-like domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 14916882 | 14942686 | - | Oco02G012270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 54,124.26 Da | 49.36 | 85.42 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00143 | PP2Cc | 227 | 472 | 5.11829E-67 | IPR001932 |
| Pfam | PF00481 | Protein phosphatase 2C | 229 | 465 | 4.9E-53 | IPR001932 |
| SUPERFAMILY | SSF81606 | PP2C-like | 219 | 473 | 1.57E-58 | IPR036457 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 39 | 170 | 3.32E-13 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 88 | 187 | 1.7E-8 | - |
| Gene3D | G3DSA:3.60.40.10 | - | 217 | 477 | 2.8E-67 | IPR036457 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 23 | 87 | 3.0E-5 | - |
| SMART | SM00331 | PP2C_SIG_2 | 229 | 472 | 3.4E-7 | IPR001932 |
| SMART | SM00332 | PP2C_4 | 215 | 470 | 1.5E-60 | IPR001932 |
| ProSiteProfiles | PS51746 | PPM-type phosphatase domain profile. | 225 | 472 | 42.185493 | IPR001932 |
| Coils | Coil | Coil | 11 | 31 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40860.4 | - | 0 |
| RefSeq | XP_006645973.2 | protein kinase and PP2C-like domain-containing protein [Oryza brachyantha] | 0 |
| Q5JJY4 | Protein kinase and PP2C-like domain-containing protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0541900 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1E837 | protein-serine/threonine phosphatase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_037777 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15792 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4542 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022241 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g063620 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58936, Sbi_jg63678 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23212 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012942 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02336, Sgl07484 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014493, gene:ENSEOMG00000032399 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0023470, CQ.Regalona.r1.3BG0024240 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30074770 |
| Apiaceae | Apium graveolens | 1 | Ag10G02213 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G008830, COCNU_06G008840 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722343 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2736.V1.1, AsparagusV1_05.2737.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G04851 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G40860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016363m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g23190.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g026450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0845 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0954 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g00480 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0320s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g01980, gene.Thate04g23680 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2668 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000079 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19029 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1950, BH02.2006, CH02.2168 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0020040, gene-QOZ80_1BG0069910 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0264760.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053180 |
| Poaceae | Oryza coarctata | 2 | Oco01G012100, Oco02G012270 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g36080.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G168700 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G008180, Chr05G015400, Chr05G015520, Chr05G015620 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G351100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG029340, gene_TRIDC3BG056150 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G200800.1, TraesCS3B02G378000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb342010_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21387 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10502 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.359, evm.TU.LG15.586 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g01040 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.222 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10092 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8540 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17852 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.851 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002905 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3155 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11381 |
| Salicaceae | Populus euphratica | 1 | populus_peu26328 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626441 |
| Solanaceae | Solanum chilense | 1 | SOLCI001366200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007788 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12404 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G2021 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00750.v3.1 |