halophFGD

Basic Information

Locus ID: Oco02G011730

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Tyrosyl-tRNA synthetase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG02	13693725	13700622	+	Oco02G011730

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.35	54,651.11 Da	43.71	88.29	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00579	tRNA synthetases class I (W and Y)	75	219	5.4E-13	IPR002305
SUPERFAMILY	SSF52374	Nucleotidylyl transferase	49	290	6.43E-45	-
Gene3D	G3DSA:3.40.50.620	HUPs	24	184	3.9E-32	IPR014729
Gene3D	G3DSA:1.10.240.10	-	208	295	1.7E-17	-
ProSitePatterns	PS00178	Aminoacyl-transfer RNA synthetases class-I signature.	85	95	-	IPR001412

Gene Ontology

Biological Process:

GO:0006418 (tRNA aminoacylation for protein translation)

Molecular Function:

GO:0000166 (nucleotide binding) GO:0004812 (aminoacyl-tRNA ligase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K01866 (tyrosyl-tRNA synthetase [EC:6.1.1.1])

Pathway:

ko00970 (Aminoacyl-tRNA biosynthesis) map00970 (Aminoacyl-tRNA biosynthesis)

Reaction:

R02918 (ATP + L-Tyrosine + tRNA(Tyr) <=> AMP + Diphosphate + L-Tyrosyl-tRNA(Tyr))

Best hit

Source	Best Hit ID	Description
TAIR	AT3G02660.1	Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial.
RefSeq	XP_025881671.1	tyrosine--tRNA ligase, chloroplastic/mitochondrial [Oryza sativa Japonica Group]
Swiss-Prot	Q9M876	Tyrosine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=EMB2768 PE=2 SV=1
TrEMBL	A0A0P0V2Y9	Tyrosine--tRNA ligase OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0500900 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg22385, Sbi_jg25863
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00007598, GOSA_00020792
Amaranthaceae	Suaeda glauca	1	Sgl20234
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... gene:ENSEOMG00000014439, gene:ENSEOMG00000021206, gene:ENSEOMG00000032143, gene:ENSEOMG00000044692
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... CQ.Regalona.r1.6AG0001550
Asteraceae	Flaveria trinervia	16	Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... Ftri17G20434, Ftri18G10643, Ftri18G13665, Ftri3G02489, Ftri4G14462, Ftri5G10762, Ftri6G09660, Ftri7G32935, Ftri7G33047, Ftri8G20906, Ftri9G08243, Ftri9G31977
Poaceae	Echinochloa crus-galli	51	AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... AH02.4536, AH03.1525, AH03.2542, AH03.3965, AH04.1546, AH04.857, AH05.694, AH07.2325, AH07.2725, AH08.227, BH01.3744, BH01.442, BH01.4776, BH01.4855, BH02.3376, BH03.266, BH05.2619, BH06.1851, BH06.1999, BH06.2556, BH06.2850, BH07.2229, BH07.2676, BH07.4192, BH08.1004, BH09.493, CH01.2044, CH01.2149, CH01.2234, CH01.3240, CH01.3413, CH02.3232, CH03.2630, CH03.3774, CH04.126, CH04.165, CH04.1903, CH05.3093, CH05.4464, CH07.2011, CH07.2447, CH09.1936, CH09.2670, CH09.2864, CH09.627
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_4BG0332600
Poaceae	Hordeum vulgare	36	HORVU.MOREX.r3.1HG0031420.1.CDS1 ... HORVU.MOREX.r3.1HG0083430.1.CDS1, HORVU.MOREX.r3.2HG0119660.1.CDS1, HORVU.MOREX.r3.2HG0157690.1.CDS1, HORVU.MOREX.r3.2HG0172390.1, HORVU.MOREX.r3.2HG0197280.1.CDS1, HORVU.MOREX.r3.3HG0277230.1.CDS1, HORVU.MOREX.r3.3HG0287370.1.CDS1, HORVU.MOREX.r3.4HG0361670.1.CDS1, HORVU.MOREX.r3.4HG0362580.1.CDS1, HORVU.MOREX.r3.4HG0389020.1.CDS1, HORVU.MOREX.r3.4HG0413260.1.CDS1, HORVU.MOREX.r3.5HG0429430.1.CDS1, HORVU.MOREX.r3.5HG0432680.1.CDS1, HORVU.MOREX.r3.5HG0455710.1.CDS1, HORVU.MOREX.r3.5HG0458740.1, HORVU.MOREX.r3.5HG0468170.1, HORVU.MOREX.r3.5HG0470180.1.CDS1, HORVU.MOREX.r3.5HG0470490.1.CDS1, HORVU.MOREX.r3.5HG0484160.1.CDS1, HORVU.MOREX.r3.6HG0539110.1.CDS1, HORVU.MOREX.r3.6HG0555430.1, HORVU.MOREX.r3.6HG0558830.1.CDS1, HORVU.MOREX.r3.6HG0585190.1.CDS1, HORVU.MOREX.r3.6HG0605780.1.CDS1, HORVU.MOREX.r3.6HG0608230.1.CDS1, HORVU.MOREX.r3.6HG0608930.1.CDS1, HORVU.MOREX.r3.6HG0609870.1.CDS1, HORVU.MOREX.r3.6HG0614030.1, HORVU.MOREX.r3.7HG0665290.1.CDS1, HORVU.MOREX.r3.7HG0675970.1.CDS1, HORVU.MOREX.r3.7HG0686270.1.CDS1, HORVU.MOREX.r3.7HG0690540.1.CDS1, HORVU.MOREX.r3.7HG0694470.1.CDS1, HORVU.MOREX.r3.7HG0706070.1.CDS1, HORVU.MOREX.r3.7HG0712050.1.CDS1
Poaceae	Lolium multiflorum	14	gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... gene-QYE76_031598, gene-QYE76_033915, gene-QYE76_036735, gene-QYE76_041797, gene-QYE76_049256, gene-QYE76_050316, gene-QYE76_054552, gene-QYE76_057534, gene-QYE76_063234, gene-QYE76_067297, gene-QYE76_068230
Poaceae	Oryza coarctata	1	Oco02G011730
Poaceae	Paspalum vaginatum	12	gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... gene-BS78_02G158400, gene-BS78_03G144500, gene-BS78_06G011500, gene-BS78_07G103100, gene-BS78_08G171400, gene-BS78_09G092300, gene-BS78_09G127100, gene-BS78_K094000, gene-BS78_K232400
Poaceae	Sporobolus alterniflorus	58	Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... Chr03G008690, Chr03G014360, Chr03G020670, Chr04G004920, Chr04G012320, Chr04G016020, Chr05G014850, Chr05G034680, Chr06G003600, Chr06G022090, Chr06G025580, Chr07G002900, Chr07G002910, Chr07G004700, Chr07G011230, Chr07G024870, Chr08G005710, Chr09G009570, Chr09G009580, Chr09G011790, Chr10G005280, Chr10G005290, Chr10G015210, Chr10G016380, Chr10G016940, Chr11G022120, Chr12G011970, Chr12G011980, Chr12G028930, Chr12G033610, Chr14G008010, Chr14G008620, Chr15G006070, Chr15G006080, Chr15G017130, Chr15G018500, Chr17G004410, Chr19G015230, Chr20G005550, Chr20G007320, Chr20G008180, Chr20G010600, Chr20G011050, Chr21G005620, Chr21G006060, Chr23G008510, Chr23G017330, Chr23G017340, Chr23G018540, Chr26G012240, Chr26G013860, Chr26G016800, Chr27G001090, Chr31G001510
Poaceae	Thinopyrum elongatum	6	Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... Tel6E01G071300, Tel6E01G071400, Tel7E01G484600
Poaceae	Triticum dicoccoides	1	gene_TRIDC7AG060430
Poaceae	Zoysia japonica	1	nbis-gene-4890
Solanaceae	Lycium barbarum	88	gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... gene-LOC132601573, gene-LOC132601684, gene-LOC132602294, gene-LOC132602375, gene-LOC132602429, gene-LOC132603304, gene-LOC132603305, gene-LOC132604055, gene-LOC132604455, gene-LOC132606488, gene-LOC132607687, gene-LOC132607709, gene-LOC132607761, gene-LOC132607768, gene-LOC132607917, gene-LOC132607943, gene-LOC132607992, gene-LOC132607993, gene-LOC132608100, gene-LOC132608378, gene-LOC132609516, gene-LOC132609560, gene-LOC132609609, gene-LOC132610374, gene-LOC132611779, gene-LOC132611785, gene-LOC132611807, gene-LOC132611832, gene-LOC132611837, gene-LOC132612053, gene-LOC132612165, gene-LOC132612201, gene-LOC132612646, gene-LOC132612968, gene-LOC132612997, gene-LOC132613026, gene-LOC132613111, gene-LOC132613125, gene-LOC132613148, gene-LOC132613217, gene-LOC132613435, gene-LOC132613816, gene-LOC132618126, gene-LOC132618148, gene-LOC132620134, gene-LOC132620753, gene-LOC132621465, gene-LOC132624192, gene-LOC132624359, gene-LOC132624397, gene-LOC132624406, gene-LOC132628580, gene-LOC132628589, gene-LOC132628681, gene-LOC132628733, gene-LOC132628864, gene-LOC132629048, gene-LOC132630311, gene-LOC132631151, gene-LOC132631279, gene-LOC132631539, gene-LOC132631704, gene-LOC132633629, gene-LOC132637024, gene-LOC132637083, gene-LOC132637342, gene-LOC132637683, gene-LOC132637737, gene-LOC132638126, gene-LOC132639158, gene-LOC132639500, gene-LOC132639506, gene-LOC132639599, gene-LOC132639606, gene-LOC132639741, gene-LOC132639932, gene-LOC132640665, gene-LOC132640975, gene-LOC132641207, gene-LOC132641299, gene-LOC132642290, gene-LOC132642335, gene-LOC132642451, gene-LOC132644299, gene-LOC132644396
Solanaceae	Solanum pennellii	1	gene-LOC107016424
Tamaricaceae	Reaumuria soongarica	22	MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... STRG.11171_chr05_-, STRG.14935_chr08_-, STRG.17875_chr09_+, STRG.2271_chr01_+, STRG.24870_chr08_+, STRG.26144_chr11_+, STRG.26385_chr11_+, STRG.26543_chr11_-, STRG.26574_chr11_+, STRG.28350_chr04_+, STRG.30337_chr10_-, STRG.31126_chr11_+, STRG.31648_chr11_+, STRG.32148_chr09_+, STRG.3814_chr02_-, STRG.4509_chr03_-, STRG.8526_chr06_+, STRG.8964_chr03_+, STRG.9014_chr03_-