Basic Information
Locus ID:
Oco02G011420
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 13051110 | 13052158 | - | Oco02G011420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.47 | 21,705.79 Da | 49.13 | 79.20 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 129 | 191 | 1.6286E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 54 | 114 | 6.1E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 127 | 190 | 4.0E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 37 | 191 | 1.36E-42 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 121 | 197 | 1.1E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 23 | 120 | 5.1E-22 | - |
| SMART | SM00054 | efh_1 | 53 | 81 | 2.1E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 165 | 193 | 4.1E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 129 | 157 | 1.9E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 89 | 117 | 0.036 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 161 | 196 | 13.118635 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 125 | 160 | 14.652882 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 49 | 84 | 14.597092 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 85 | 120 | 10.496468 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 62 | 74 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 138 | 150 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 174 | 186 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 98 | 110 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 45 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_015696040.2 | probable calcium-binding protein CML11 [Oryza brachyantha] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0JJB5 | Calcium-binding protein CML11 OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology