Basic Information
Locus ID:
Oco02G010060
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 10563201 | 10567184 | + | Oco02G010060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 70,901.61 Da | 36.28 | 89.72 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 354 | 618 | 6.42655E-92 | - |
| Pfam | PF00069 | Protein kinase domain | 349 | 549 | 1.1E-47 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 36 | 131 | 1.3E-14 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 158 | 258 | 4.0E-11 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 331 | 627 | 6.88E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 147 | 261 | 3.0E-19 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 30 | 133 | 6.2E-16 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 424 | 626 | 8.4E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 313 | 423 | 3.8E-36 | - |
| SMART | SM00220 | serkin_6 | 348 | 610 | 2.4E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 348 | 626 | 36.032524 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 142 | 261 | 15.275868 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 31 | 134 | 15.592692 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 354 | 376 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 467 | 479 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23230.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 15. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_015641523.1 | cysteine-rich receptor-like protein kinase 15 [Oryza sativa Japonica Group] | 0 |
| Q8W4G6 | Cysteine-rich receptor-like protein kinase 15 OS=Arabidopsis thaliana OX=3702 GN=CRK15 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0MVW2 | Protein kinase domain-containing protein OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.2073, CH02.2296, CH07.185 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0627900.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G009710, Oco02G010060 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g23970.1, LOC_Os01g38850.1, LOC_Os01g38910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G157100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G017310, Chr03G009290, Chr05G016650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G685700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG056390, gene_TRIDC6AG056400 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3B02G231200.1, TraesCS6A02G378900.1 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-21510, nbis-gene-29462, nbis-gene-29465 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g10423, Zma_g7034, Zma_g8087, Zma_g8088, Zma_g8089 |