Basic Information
Locus ID:
Oco02G009990
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 10430785 | 10437582 | + | Oco02G009990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 57,607.79 Da | 56.26 | 89.75 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 343 | 517 | 4.90039E-105 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 13 | 108 | 2.4E-9 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 340 | 446 | 1.1E-16 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 343 | 473 | 3.01E-19 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 331 | 517 | 4.3E-71 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 12 | 127 | 3.9E-26 | - |
| SMART | SM00232 | pad1_6 | 342 | 470 | 3.0E-12 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 342 | 473 | 25.415127 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_015621755.1 | AMSH-like ubiquitin thioesterase 3 [Oryza sativa Japonica Group] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1EWX8 | MPN domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_015218 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology