Basic Information
Locus ID:
Oco02G007160
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 7241240 | 7250922 | - | Oco02G007160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 126,993.93 Da | 41.75 | 80.62 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 922 | 954 | 0.0037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 423 | 459 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 344 | 960 | 3.06E-42 | IPR011047 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 896 | 1118 | 3.14E-14 | IPR011048 |
| Gene3D | G3DSA:2.130.10.10 | - | 512 | 649 | 6.6E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 304 | 511 | 1.0E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 802 | 1110 | 3.7E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 829 | 870 | 62.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 351 | 0.068 | IPR001680 |
| SMART | SM00320 | WD40_4 | 916 | 955 | 2.3E-5 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.1E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 418 | 459 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 461 | 502 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1070 | 1102 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 551 | 591 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 373 | 412 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 873 | 913 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 505 | 548 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1005 | 1047 | 59.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 569 | 600 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 425 | 460 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 923 | 958 | 10.021053 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.045877 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 923 | 964 | 12.079106 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 446 | 460 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1141 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_015698754.1 | protein TPR1 isoform X2 [Oryza brachyantha] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1E492 | WD_REPEATS_REGION domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_029612 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology