Basic Information
Locus ID:
Oco02G005460
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PAN-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 5555237 | 5557954 | - | Oco02G005460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 84,116.85 Da | 39.65 | 94.15 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 38 | 156 | 2.81396E-21 | IPR001480 |
| CDD | cd01098 | PAN_AP_plant | 317 | 398 | 1.63478E-24 | - |
| CDD | cd14066 | STKc_IRAK | 466 | 730 | 1.16289E-92 | - |
| Pfam | PF00069 | Protein kinase domain | 463 | 726 | 9.8E-50 | IPR000719 |
| Pfam | PF01453 | D-mannose binding lectin | 83 | 179 | 7.4E-18 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 244 | 299 | 1.2E-6 | IPR000858 |
| Pfam | PF08276 | PAN-like domain | 325 | 382 | 4.0E-11 | IPR003609 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 443 | 729 | 3.24E-79 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 95 | 177 | 2.09E-16 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 429 | 534 | 1.9E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 535 | 738 | 4.3E-60 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 25 | 153 | 6.8E-15 | IPR036426 |
| SMART | SM00473 | ntp_6 | 325 | 399 | 3.8E-5 | IPR003609 |
| SMART | SM00220 | serkin_6 | 460 | 728 | 2.4E-39 | IPR000719 |
| SMART | SM00108 | blect_4 | 37 | 156 | 1.5E-17 | IPR001480 |
| PIRSF | PIRSF000641 | SRK | 4 | 753 | 5.2E-226 | IPR024171 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 31 | 152 | 13.27186 | IPR001480 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 460 | 729 | 37.95475 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 321 | 399 | 9.145679 | IPR003609 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 579 | 591 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 466 | 489 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19130.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_006643928.2 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Oryza brachyantha] | 0 |
| O64477 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana OX=3702 GN=At2g19130 PE=2 SV=1 | 0 | |
| TrEMBL | J3KXU0 | Receptor-like serine/threonine-protein kinase OS=Oryza brachyantha OX=4533 GN=102721113 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology