Basic Information
Locus ID:
Oco02G005430
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 5520316 | 5537174 | + | Oco02G005430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 77,149.38 Da | 33.45 | 90.71 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 393 | 652 | 2.8E-42 | IPR000719 |
| Pfam | PF01453 | D-mannose binding lectin | 94 | 163 | 2.0E-14 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 271 | 300 | 1.1E-5 | IPR003609 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 379 | 659 | 3.1E-64 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 101 | 214 | 9.81E-11 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 465 | 669 | 2.1E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 360 | 464 | 1.7E-25 | - |
| SMART | SM00220 | serkin_6 | 390 | 665 | 7.1E-17 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 390 | 665 | 32.385956 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 510 | 522 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19130.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_044418328.1 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Triticum aestivum] | 0 |
| O64477 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana OX=3702 GN=At2g19130 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0JFQ8 | Receptor-like serine/threonine-protein kinase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0049850 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0219000.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_051417, gene-QYE76_051419 |
| Poaceae | Oryza coarctata | 1 | Oco02G005430 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g12290.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G011700 |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G867200, Tel6E01G181900, Tel7E01G057800 |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC3AG002400, gene_TRIDC3AG068960 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3A02G003600.1.cds1, TraesCS3B02G174800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb119590_P002 |