Basic Information
Locus ID:
Oco02G004820
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RNA binding (RRM RBD RNP motifs) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 4824029 | 4832364 | - | Oco02G004820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.42 | 93,019.78 Da | 56.34 | 64.64 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16618 | mRING-HC-C4C4_CNOT4 | 9 | 58 | 2.73016E-23 | IPR039515 |
| CDD | cd12438 | RRM_CNOT4 | 115 | 210 | 1.43988E-44 | IPR034261 |
| Pfam | PF14570 | RING/Ubox like zinc-binding domain | 9 | 60 | 2.8E-19 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 197 | 2.1E-4 | IPR000504 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 73 | 2.32E-13 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 118 | 220 | 4.07E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 77 | 4.1E-22 | IPR013083 |
| Gene3D | G3DSA:3.30.70.330 | - | 121 | 199 | 5.0E-21 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 121 | 199 | 1.0E-9 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 120 | 203 | 10.752462 | IPR000504 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 9 | 57 | 9.59769 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 570 | - | - |
| Coils | Coil | Coil | 75 | 95 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60170.1 | RNA binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_015689088.1 | uncharacterized protein LOC102710340 [Oryza brachyantha] | 0 |
| Q09818 | Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16C9.04c PE=3 SV=1 | 0 | |
| TrEMBL | A0A0E0MSY7 | RRM domain-containing protein OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.235, BH02.242, CH02.249 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0246290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051130 |
| Poaceae | Oryza coarctata | 1 | Oco02G004820 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g11130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G021800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205133, Pt_Chr0205183 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028050, Chr05G005750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G256800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG018050, gene_TRIDC3BG023800 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G133600.1, TraesCS3B02G165900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb120310_P002 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7259 |