Basic Information
Locus ID:
Oco02G003840
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 3642882 | 3658338 | + | Oco02G003840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 44,195.29 Da | 40.32 | 80.12 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 236 | 270 | 1.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 121 | 154 | 6.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 275 | 309 | 4.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 117 | 406 | 1.46E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 110 | 188 | 3.4E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 193 | 412 | 9.0E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 233 | 270 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 189 | 226 | 9.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 397 | 90.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 115 | 154 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 273 | 310 | 0.002 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 240 | 279 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 240 | 272 | 10.07378 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 122 | 154 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 122 | 163 | 14.151034 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 257 | 271 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 297 | 311 | 9.9E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 257 | 271 | 9.9E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 141 | 155 | 9.9E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 109 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_052140589.1 | zinc finger CCCH domain-containing protein 17-like [Oryza glaberrima] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0JF20 | WD_REPEATS_REGION domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology