Basic Information
Locus ID:
Oco02G002970
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
PLD1
Description:
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 2744913 | 2748894 | - | Oco02G002970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 92,271.46 Da | 40.91 | 81.31 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04015 | C2_plant_PLD | 2 | 152 | 6.0013E-70 | - |
| Pfam | PF00614 | Phospholipase D Active site motif | 330 | 368 | 1.4E-11 | IPR001736 |
| Pfam | PF00168 | C2 domain | 8 | 131 | 7.7E-14 | IPR000008 |
| Pfam | PF12357 | Phospholipase D C terminal | 730 | 802 | 1.8E-29 | IPR024632 |
| Pfam | PF00614 | Phospholipase D Active site motif | 659 | 685 | 1.5E-7 | IPR001736 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 5 | 154 | 6.34E-18 | IPR035892 |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 504 | 742 | 5.69E-30 | - |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 156 | 450 | 8.63E-36 | - |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 5 | 164 | 1.7E-13 | IPR035892 |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 481 | 701 | 5.9E-22 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 203 | 446 | 3.8E-24 | - |
| SMART | SM00155 | pld_4 | 330 | 368 | 7.3E-4 | IPR001736 |
| SMART | SM00155 | pld_4 | 658 | 685 | 1.1E-8 | IPR001736 |
| SMART | SM00239 | C2_3c | 9 | 129 | 6.1E-11 | IPR000008 |
| PIRSF | PIRSF036470 | PLD_plant | 1 | 812 | 0.0 | IPR011402 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 1 | 130 | 13.297882 | IPR000008 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 658 | 685 | 15.418399 | IPR001736 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 330 | 368 | 11.247199 | IPR001736 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko00564 (Glycerophospholipid metabolism)
map00564 (Glycerophospholipid metabolism)
ko00565 (Ether lipid metabolism)
map00565 (Ether lipid metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04024 (cAMP signaling pathway)
map04024 (cAMP signaling pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04072 (Phospholipase D signaling pathway)
map04072 (Phospholipase D signaling pathway)
map04666 (Fc gamma R-mediated phagocytosis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15730.1 | phospholipase D alpha 1. Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements. PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis. | 0 |
| RefSeq | XP_052140341.1 | phospholipase D alpha 1 [Oryza glaberrima] | 0 |
| Q43007 | Phospholipase D alpha 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PLD1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0D3EK50 | Phospholipase D OS=Oryza barthii OX=65489 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology