Basic Information
Locus ID:
Oco02G002950
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 2736913 | 2738137 | - | Oco02G002950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 19,876.47 Da | 63.23 | 47.88 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 53 | 0.00289164 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 56 | 7.79E-8 | IPR036020 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.7E-5 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 10.836801 | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 134 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | NP_001396156.1 | dEAD-box ATP-dependent RNA helicase 14 isoform 4 [Oryza sativa Japonica Group] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D3EK47 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza barthii OX=65489 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology