Basic Information
Locus ID:
Oco02G002890
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
protein ubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 2692233 | 2697966 | - | Oco02G002890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 69,343.88 Da | 35.62 | 100.25 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 125 | 183 | 1.2E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 72 | 1.7E-11 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 306 | 575 | 6.6E-43 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 197 | 2.11E-35 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 282 | 579 | 2.02E-74 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 274 | 381 | 7.7E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 382 | 597 | 6.9E-62 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 214 | 6.9E-52 | IPR032675 |
| SMART | SM00220 | serkin_6 | 305 | 578 | 1.0E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 305 | 588 | 35.467167 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 428 | 440 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 311 | 333 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60800.1 | NSP-interacting kinase 3. | 0 |
| RefSeq | XP_006643812.2 | protein NSP-INTERACTING KINASE 3 isoform X1 [Oryza brachyantha] | 0 |
| Q93ZS4 | Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana OX=3702 GN=NIK3 PE=1 SV=1 | 0 | |
| TrEMBL | J3KWT3 | Protein kinase domain-containing protein OS=Oryza brachyantha OX=4533 GN=102709498 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology