Basic Information
Locus ID:
Oco02G002730
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 2530889 | 2534611 | + | Oco02G002730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 48,476.75 Da | 36.88 | 82.13 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 288 | 0.024 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 36 | 290 | 1.02E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 57 | 325 | 7.6E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 205 | 245 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 32 | 71 | 40.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 289 | 0.37 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.2 | - | 0 |
| RefSeq | XP_015620970.1 | autophagy-related protein 18d [Oryza sativa Japonica Group] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D9UX83 | Autophagy-related protein 18c OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology