Basic Information
Locus ID:
Oco02G002620
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 2459160 | 2460143 | + | Oco02G002620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.81 | 28,450.26 Da | 29.95 | 82.78 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 15 | 211 | 3.5E-60 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 8 | 249 | 6.81E-54 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 2 | 168 | 3.1E-53 | IPR016138 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 169 | 263 | 1.2E-40 | IPR016139 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 157 | 177 | 2.9E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 66 | 81 | 2.9E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 17 | 30 | 2.9E-7 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040385856.1 | protein synthesis inhibitor II-like [Oryza brachyantha] | 0 |
| P04399 | Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0JEJ1 | rRNA N-glycosylase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology