Basic Information
Locus ID:
Oco02G002460
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 2329079 | 2330998 | - | Oco02G002460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.63 | 32,009.52 Da | 35.01 | 84.59 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 15 | 212 | 2.7E-61 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 8 | 215 | 5.11E-49 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 2 | 166 | 7.5E-54 | IPR016138 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 168 | 292 | 3.3E-31 | IPR016139 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 66 | 81 | 6.2E-6 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 17 | 30 | 6.2E-6 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 156 | 176 | 6.2E-6 | IPR017989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 254 | - | - |
| Coils | Coil | Coil | 229 | 266 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006643783.2 | protein synthesis inhibitor II-like [Oryza brachyantha] | 0 |
| P04399 | Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 | 0 | |
| TrEMBL | J3KWM6 | rRNA N-glycosylase OS=Oryza brachyantha OX=4533 GN=102700376 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology