Basic Information
Locus ID:
Oco02G002450
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 2310893 | 2319847 | - | Oco02G002450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 54,509.22 Da | 36.39 | 82.08 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 39 | 179 | 3.97559E-56 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 327 | 493 | 3.56261E-77 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 358 | 481 | 1.0E-10 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 206 | 318 | 2.7E-19 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 39 | 185 | 2.3E-20 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 327 | 503 | 2.86E-35 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 204 | 319 | 2.16E-25 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 39 | 195 | 7.51E-27 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 329 | 494 | 6.0E-48 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 33 | 190 | 2.3E-39 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 203 | 328 | 2.0E-26 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 324 | 505 | 2.3E-63 | IPR012110 |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 37 | 327 | 3.9E-82 | IPR012110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| Coils | Coil | Coil | 151 | 171 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_015615261.1 | pyruvate decarboxylase 2 [Oryza sativa Japonica Group] | 0 |
| P28516 | Pyruvate decarboxylase 1 OS=Zea mays OX=4577 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | Q9LGL5 | pyruvate decarboxylase OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0160100 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology