Basic Information
Locus ID:
Oco02G002410
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 2271949 | 2277453 | - | Oco02G002410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 58,457.67 Da | 51.59 | 71.17 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 487 | 528 | 3.3715E-18 | - |
| Pfam | PF13639 | Ring finger domain | 486 | 528 | 4.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 477 | 530 | 1.22E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 463 | 531 | 1.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 487 | 527 | 1.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 487 | 528 | 13.094151 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 273 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10650.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006643778.1 | E3 ubiquitin-protein ligase MBR2-like [Oryza brachyantha] | 0 |
| Q9ZQF9 | E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0MRM4 | RING-type domain-containing protein OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology