Basic Information
Locus ID:
Oco02G001820
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 1812244 | 1813518 | - | Oco02G001820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 27,730.36 Da | 53.51 | 74.31 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 3 | 155 | 7.0E-51 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 1 | 78 | 5.0E-23 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 80 | 155 | 7.9E-22 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 255 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_015693750.2 | ubiquitin fusion degradation protein 1 homolog [Oryza brachyantha] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1E799 | Ubiquitin fusion degradation protein 1 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_037890 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology