Basic Information
Locus ID:
Oco01G031310
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 37408524 | 37409600 | - | Oco01G031310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 38,122.29 Da | 33.33 | 88.27 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 4 | 176 | 3.62757E-55 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 201 | 355 | 1.47178E-76 | - |
| Pfam | PF00190 | Cupin | 9 | 154 | 1.4E-24 | IPR006045 |
| Pfam | PF00190 | Cupin | 199 | 341 | 4.9E-21 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 12 | 347 | 1.66E-46 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 8 | 181 | 1.2E-27 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 198 | 358 | 3.9E-48 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 198 | 342 | 1.7E-14 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 160 | 6.5E-27 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 279 | 294 | 2.9E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 214 | 234 | 2.9E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 261 | 277 | 2.9E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 297 | 315 | 2.9E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 319 | 336 | 2.9E-12 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_015641111.1 | 11S globulin seed storage protein 2 [Oryza sativa Japonica Group] | 0 |
| P07728 | Glutelin type-A 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1F9Z4 | 11S seed storage protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_018899 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology