Basic Information
Locus ID:
Oco01G031070
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 37209288 | 37212361 | + | Oco01G031070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 51,647.70 Da | 58.38 | 73.50 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 170 | 446 | 2.23905E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 410 | 446 | 2.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 361 | 8.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 281 | 316 | 1.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 147 | 447 | 3.24E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 142 | 450 | 1.8E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 149 | 190 | 96.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 316 | 1.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 364 | 404 | 490.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 273 | 9.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 233 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 446 | 7.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 361 | 4.4E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 316 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 326 | 370 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 414 | 447 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 414 | 447 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 325 | 14.084198 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 433 | 447 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 154 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_015632353.1 | protein FIZZY-RELATED 3 [Oryza sativa Japonica Group] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | Q5JME1 | Os01g0972900 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0972900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology