Basic Information
Locus ID:
Oco01G029980
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 36362682 | 36371289 | - | Oco01G029980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 79,101.27 Da | 53.23 | 53.61 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 148 | 429 | 3.61603E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 350 | 386 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 399 | 429 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 307 | 344 | 2.3E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 302 | 2.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 229 | 260 | 9.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 184 | 217 | 0.0085 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 143 | 429 | 8.01E-75 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 124 | 301 | 4.9E-37 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 302 | 437 | 7.7E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 347 | 387 | 7.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 176 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 390 | 430 | 5.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 179 | 218 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 220 | 260 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 302 | 5.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 1.7E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 354 | 386 | 9.467419 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 228 | 269 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 398 | 429 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 347 | 10.548323 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 228 | 260 | 8.940149 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 398 | 429 | 9.335602 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 354 | 386 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 270 | 307 | 12.103769 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 144 | 176 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 270 | 311 | 16.222963 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 186 | 218 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 186 | 218 | 8.940149 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 289 | 303 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 715 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13480.3 | - | 0 |
| RefSeq | XP_015621292.1 | flowering time control protein FY isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q6NLV4 | Flowering time control protein FY OS=Arabidopsis thaliana OX=3702 GN=FY PE=1 SV=1 | 0 | |
| TrEMBL | B9EWG8 | WD_REPEATS_REGION domain-containing protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_04772 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28976 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17172 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032394 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29958, Sbi_jg43421 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18479 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004240 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl14343, Sgl14344, Sgl19510, Sgl66259, Sgl66263, Sgl70574 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000015624, gene:ENSEOMG00000021875 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0004450, CQ.Regalona.r1.2BG0005670 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165980 |
| Apiaceae | Apium graveolens | 1 | Ag1G00190 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G008240, COCNU_16G002290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714650, gene-LOC103722450 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.77.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G16520 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G13480.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012890m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g30540.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g024850.2N, BniB08g006340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0874 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0886 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g11330 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0510s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g10270 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3166, nbisL1-mrna-4862 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1980 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014814 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02357 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4521, BH02.4571, CH02.4622 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0046570, gene-QOZ80_3BG0295310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0495130.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_058078 |
| Poaceae | Oryza coarctata | 2 | Oco01G029980, Oco02G031140 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g72220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G401000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403030 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G000200, Chr02G000990, Chr05G033670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G469300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG043980, gene_TRIDC5BG047980 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G293600.2, TraesCS5B02G292800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb140970_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12611, nbis-gene-26152, nbis-gene-26153 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10909, Zma_g8457 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1077, evm.TU.LG25.286 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.55 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7151 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19600 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14506 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.346 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009963 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-241 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22077 |
| Salicaceae | Populus euphratica | 2 | populus_peu04256, populus_peu35076 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635775 |
| Solanaceae | Solanum chilense | 1 | SOLCI002121600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028734 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13509 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3886 |
| Zosteraceae | Zostera marina | 1 | Zosma06g29860.v3.1 |