Basic Information
Locus ID:
Oco01G029290
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 35626096 | 35630473 | - | Oco01G029290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 49,252.70 Da | 49.07 | 73.94 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 326 | 357 | 0.028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 280 | 308 | 0.19 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 96 | 360 | 8.16E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 119 | 432 | 3.6E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 273 | 313 | 9.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 191 | 226 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 316 | 357 | 0.0088 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 95 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_015621196.1 | autophagy-related protein 18a [Oryza sativa Japonica Group] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0FYE9 | WD_REPEATS_REGION domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology