Basic Information
Locus ID:
Oco01G028650
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 34901039 | 34902795 | - | Oco01G028650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 40,492.78 Da | 50.67 | 80.08 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 331 | 371 | 2.9E-6 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 50 | 102 | 6.41E-8 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 330 | 377 | 5.23E-9 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 122 | 235 | 1.96E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 320 | 375 | 6.7E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 111 | 300 | 7.9E-18 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 329 | 371 | 11.092784 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_040381750.1 | F-box protein At1g67340-like isoform X1 [Oryza brachyantha] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1ET67 | MYND-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_036209 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology