Basic Information
Locus ID:
Oco01G028420
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 34718332 | 34723609 | - | Oco01G028420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 11,024.26 Da | 53.57 | 64.85 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 20 | 93 | 1.88403E-48 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 22 | 92 | 1.9E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 3 | 97 | 9.62E-28 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 97 | 8.5E-39 | - |
| SMART | SM00213 | ubq_7 | 22 | 93 | 6.3E-13 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 20 | 97 | 15.056899 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | NP_001393041.1 | small ubiquitin-related modifier 1-like [Oryza sativa Japonica Group] | 0 |
| P55857 | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0P0VC40 | Small ubiquitin-related modifier OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0918200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology