Basic Information
Locus ID:
Oco01G028390
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 34683865 | 34685118 | - | Oco01G028390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 31,315.87 Da | 58.32 | 50.89 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 244 | 281 | 1.87689E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 243 | 287 | 9.0E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 243 | 288 | 1.01E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 219 | 292 | 1.2E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 244 | 281 | 7.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 244 | 282 | 10.881201 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 160 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_040384911.1 | general transcription factor IIF subunit 1 [Oryza brachyantha] | 0 |
| TrEMBL | A0A0E0JST8 | RING-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology