Basic Information
Locus ID:
Oco01G027580
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 33861665 | 33868078 | - | Oco01G027580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 162,991.59 Da | 38.84 | 107.12 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1198 | 1418 | 1.41984E-115 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 885 | 1175 | 3.86808E-75 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 270 | 555 | 3.13685E-92 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 585 | 791 | 1.11004E-100 | - |
| Pfam | PF00005 | ABC transporter | 1217 | 1365 | 2.6E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 612 | 743 | 4.2E-16 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 893 | 1127 | 9.8E-22 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 267 | 534 | 3.3E-21 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 261 | 560 | 1.83E-29 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 612 | 806 | 2.87E-51 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1194 | 1427 | 2.28E-63 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 888 | 1176 | 3.14E-45 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 601 | 838 | 2.9E-68 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1183 | 1437 | 8.8E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 856 | 1181 | 1.0E-51 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 237 | 569 | 1.0E-44 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1226 | 1419 | 1.2E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 617 | 799 | 2.3E-14 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 271 | 547 | 30.388176 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1200 | 1434 | 17.333735 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 887 | 1163 | 33.689007 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 591 | 814 | 21.255283 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 716 | 730 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_015616248.1 | putative ABC transporter C family member 15 [Oryza sativa Japonica Group] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | Q5N6Y2 | Putative MRP-like ABC transporter OS=Oryza sativa subsp. japonica OX=39947 GN=P0035F12.35 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology