Basic Information
Locus ID:
Oco01G027500
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 33824320 | 33831830 | - | Oco01G027500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 45,887.84 Da | 40.89 | 89.42 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 68 | 331 | 5.1E-119 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 334 | 389 | 1.7E-7 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 69 | 331 | 3.47E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 95 | 396 | 2.4E-111 | IPR027417 |
| SMART | SM00382 | AAA_5 | 118 | 292 | 2.3E-8 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 65 | 387 | 1.2E-136 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 265 | 336 | 25.855576 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 96 | 255 | 39.197559 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 277 | 285 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 188 | 217 | 5.5E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 361 | 378 | 5.5E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 307 | 336 | 5.5E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 274 | 302 | 5.5E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 226 | 255 | 5.5E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 154 | 183 | 5.5E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 65 | 393 | 43.416328 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 404 | - | - |
| Coils | Coil | Coil | 372 | 392 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_015612195.1 | DNA repair protein recA homolog 3, mitochondrial [Oryza sativa Japonica Group] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | B9EVE4 | Os01g0901200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0901200 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology