Basic Information
Locus ID:
Oco01G025750
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 32139221 | 32139868 | + | Oco01G025750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 22,776.19 Da | 52.67 | 84.00 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 143 | 186 | 2.9E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 141 | 192 | 2.45E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 188 | 1.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 144 | 185 | 2.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 144 | 186 | 12.474524 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49230.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015642810.1 | RING-H2 finger protein ATL72 [Oryza sativa Japonica Group] | 0 |
| Q6NQG7 | RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1 | 0 | |
| TrEMBL | A2WXA9 | RING-type domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_04554 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.3986, BH02.4005, CH02.4034 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0041010, gene-QOZ80_1BG0091050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0299850.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco01G025750, Oco02G026680 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g64620.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G347700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G003800, Chr08G021400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G601700 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G377100.1.cds1, TraesCS3B02G409700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb146800_P001, Zm00001eb366740_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11275, nbis-gene-28641 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11613, Zma_g9073 |