Basic Information
Locus ID:
Oco01G025730
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 32103490 | 32104701 | - | Oco01G025730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 42,976.35 Da | 46.05 | 109.93 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 12 | 55 | 1.26862E-19 | - |
| Pfam | PF04564 | U-box domain | 8 | 78 | 7.8E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 109 | 369 | 3.73E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 78 | 1.33E-25 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 88 | 385 | 4.4E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 87 | 2.3E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 11 | 76 | 1.2E-27 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 267 | 310 | 8.627399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 7 | 83 | 36.419514 | IPR003613 |
| Coils | Coil | Coil | 116 | 136 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_015619864.1 | E3 ubiquitin-protein ligase PUB23 [Oryza sativa Japonica Group] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1E2C6 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_029025 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology