Basic Information
Locus ID:
Oco01G025310
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 31675651 | 31685257 | - | Oco01G025310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 81,250.24 Da | 43.19 | 88.00 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 264 | 375 | 6.9E-8 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 539 | 584 | 1.1E-8 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 146 | 401 | 7.19E-23 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 522 | 585 | 1.43E-12 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 647 | 724 | 1.57E-10 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 144 | 405 | 8.9E-27 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 518 | 590 | 5.1E-8 | - |
| SMART | SM00358 | DRBM_3 | 521 | 585 | 3.9E-6 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 648 | 714 | 0.27 | IPR014720 |
| SMART | SM00577 | forpap2 | 208 | 384 | 1.6E-10 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 647 | 715 | 9.562026 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 520 | 586 | 11.407024 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 149 | 397 | 17.12381 | IPR004274 |
| Coils | Coil | Coil | 567 | 587 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_015620281.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X3 [Oryza sativa Japonica Group] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0D3EWG4 | protein-serine/threonine phosphatase OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology