Basic Information
Locus ID:
Oco01G024490
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PPR repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 30643651 | 30646572 | + | Oco01G024490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 50,136.84 Da | 41.60 | 88.75 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 237 | 284 | 2.7E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 8 | 37 | 0.17 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 136 | 184 | 1.3E-11 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 301 | 445 | 7.1E-8 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 64 | 195 | 5.5E-26 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 196 | 299 | 5.2E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 63 | 4.1E-7 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 139 | 173 | 1.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 240 | 273 | 4.8E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 108 | 131 | 8.3E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 106 | 136 | 8.900633 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 5 | 39 | 9.371969 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 137 | 171 | 12.079411 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 238 | 272 | 13.230347 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42450.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_052151137.1 | pentatricopeptide repeat-containing protein At5g42450, mitochondrial [Oryza glaberrima] | 0 |
| Q9FIH2 | Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E102 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0JQU2 | DYW_deaminase domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3406 |
| Apiaceae | Apium graveolens | 1 | Ag4G01570 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705936 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.181.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G10384 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42450.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003325m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g07880.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g035470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1223 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1249 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1302 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00003320, Pov_00013156, Pov_00013157 |
| Poaceae | Echinochloa crus-galli | 2 | BH02.3832, BH07.4142 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0039320, gene-QOZ80_1BG0089340 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0302930.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056250 |
| Poaceae | Oryza coarctata | 2 | Oco01G024490, Oco02G025360 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g62220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G330400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G005130, Chr05G028260 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G572300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG051410, gene_TRIDC3BG057980 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G357300.1.cds1, TraesCS3B02G389900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb148530_P001 |
| Salicaceae | Populus euphratica | 1 | populus_peu12508 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630212 |
| Solanaceae | Solanum chilense | 1 | SOLCI006210600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029839 |
| Zosteraceae | Zostera marina | 1 | Zosma03g12260.v3.1 |