Basic Information
Locus ID:
Oco01G024080
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
CPK13
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 30216663 | 30231581 | + | Oco01G024080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 60,649.49 Da | 39.26 | 83.58 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 448 | 510 | 9.77019E-20 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 70 | 328 | 3.2044E-135 | - |
| Pfam | PF13499 | EF-hand domain pair | 375 | 435 | 3.9E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 447 | 510 | 2.2E-14 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 71 | 329 | 9.1E-74 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 69 | 336 | 1.23E-84 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 357 | 535 | 2.29E-46 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 338 | 513 | 1.3E-54 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 157 | 337 | 8.5E-62 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 72 | 156 | 1.4E-23 | - |
| SMART | SM00054 | efh_1 | 412 | 440 | 0.81 | IPR002048 |
| SMART | SM00054 | efh_1 | 448 | 476 | 8.0E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 376 | 404 | 4.0E-6 | IPR002048 |
| SMART | SM00220 | serkin_6 | 71 | 329 | 1.3E-96 | IPR000719 |
| SMART | SM00054 | efh_1 | 484 | 512 | 8.4E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 480 | 515 | 14.346033 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 372 | 407 | 16.18713 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 444 | 479 | 14.792358 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 71 | 329 | 46.717831 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 408 | 443 | 8.460104 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 457 | 469 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 493 | 505 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 191 | 203 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 385 | 397 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 77 | 100 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_006646451.2 | calcium-dependent protein kinase 3 [Oryza brachyantha] | 0 |
| Q8LPZ7 | Calcium-dependent protein kinase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1BI50 | Calcium-dependent protein kinase 30 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002233 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology