Basic Information
Locus ID:
Oco01G022520
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 28656884 | 28659353 | + | Oco01G022520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 37,099.30 Da | 78.71 | 60.76 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 192 | 233 | 1.99701E-21 | - |
| Pfam | PF14369 | zinc-ribbon | 6 | 36 | 1.7E-9 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 192 | 233 | 5.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 238 | 1.48E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 239 | 1.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 192 | 232 | 9.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 233 | 11.736875 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 266 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_052161590.1 | probable E3 ubiquitin-protein ligase RHC1A [Oryza glaberrima] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D3EV54 | RING-type E3 ubiquitin transferase OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology