Basic Information
Locus ID:
Oco01G021860
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 27871817 | 27883512 | - | Oco01G021860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 142,679.23 Da | 51.48 | 74.46 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 526 | 852 | 5.0044E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 1106 | 1213 | 2.11549E-52 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 968 | 1000 | 1.7E-6 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1097 | 1203 | 1.3E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 543 | 930 | 4.3E-68 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 506 | 852 | 2.28E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 861 | 1229 | 7.02E-49 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 967 | 1013 | 1.46E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 967 | 1022 | 4.7E-8 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 611 | 709 | 7.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 728 | 865 | 3.2E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 867 | 1266 | 8.2E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 500 | 587 | 4.6E-11 | IPR038718 |
| SMART | SM00184 | ring_2 | 968 | 1006 | 0.004 | IPR001841 |
| SMART | SM00487 | ultradead3 | 522 | 819 | 1.5E-25 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1120 | 1203 | 3.8E-18 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 603 | 814 | 11.735126 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1096 | 1251 | 13.227682 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 968 | 1007 | 9.464913 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 983 | 992 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 701 | 749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 379 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_015616236.1 | helicase-like transcription factor CHR28 isoform X3 [Oryza sativa Japonica Group] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | B8AAE9 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related OS=Oryza sativa subsp. indica OX=39946 GN=OsI_03975 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology