Basic Information
Locus ID:
Oco01G021420
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 27373280 | 27393664 | - | Oco01G021420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 129,611.24 Da | 47.38 | 80.11 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 192 | 520 | 7.58389E-152 | - |
| CDD | cd00121 | MATH | 53 | 174 | 4.61879E-32 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 194 | 515 | 6.5E-44 | IPR001394 |
| Pfam | PF00917 | MATH domain | 62 | 176 | 9.6E-15 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 881 | 1088 | 3.5E-47 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 619 | 871 | 1.3E-72 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 49 | 183 | 2.13E-36 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 189 | 545 | 1.81E-94 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 797 | 894 | 1.4E-22 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 48 | 190 | 2.9E-46 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 680 | 796 | 8.5E-39 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 191 | 519 | 3.3E-87 | - |
| SMART | SM00061 | math_3 | 53 | 155 | 5.3E-12 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 51 | 174 | 32.894428 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 194 | 518 | 38.529675 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 434 | 451 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 195 | 210 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_015612854.1 | ubiquitin carboxyl-terminal hydrolase 13 [Oryza sativa Japonica Group] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | Q94ED6 | ubiquitinyl hydrolase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=P0665A11.32 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology