Basic Information
Locus ID:
Oco01G021140
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 27064725 | 27066227 | - | Oco01G021140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 23,611.53 Da | 43.77 | 79.86 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 25 | 69 | 5.90086E-31 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 26 | 67 | 9.7E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 24 | 80 | 3.95E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 81 | 1.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 27 | 67 | 9.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 27 | 68 | 13.477729 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 42 | 51 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015616955.1 | E3 ubiquitin-protein ligase RNF5 [Oryza sativa Japonica Group] | 0 |
| O35445 | E3 ubiquitin-protein ligase RNF5 OS=Mus musculus OX=10090 GN=Rnf5 PE=1 SV=1 | 0 | |
| TrEMBL | A2WVF2 | RING-type E3 ubiquitin transferase OS=Oryza sativa subsp. indica OX=39946 GN=OsI_03866 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology