Basic Information
Locus ID:
Oco01G020160
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 25878909 | 25884916 | - | Oco01G020160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 87,346.20 Da | 57.12 | 75.83 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 568 | 600 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 651 | 684 | 0.13 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 42 | 253 | 4.66E-13 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 475 | 787 | 1.4E-50 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 41 | 257 | 2.3E-19 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 453 | 789 | 4.8E-119 | IPR015943 |
| SMART | SM00320 | WD40_4 | 603 | 642 | 0.042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 748 | 787 | 6.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 557 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 507 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 646 | 684 | 5.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 560 | 600 | 7.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 693 | 732 | 1.5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 567 | 602 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 653 | 693 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 653 | 686 | 9.836508 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 567 | 609 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 248 | 9.68675 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 671 | 685 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 587 | 601 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 587 | 601 | 5.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 671 | 685 | 5.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 544 | 558 | 5.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 41 | - | - |
| Coils | Coil | Coil | 251 | 281 | - | - |
| Coils | Coil | Coil | 289 | 309 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_052167910.1 | protein SPA1-RELATED 4-like isoform X1 [Oryza glaberrima] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | I1NRD4 | Protein kinase domain-containing protein OS=Oryza glaberrima OX=4538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology