Basic Information
Locus ID:
Oco01G019670
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 25382627 | 25385494 | - | Oco01G019670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 88,989.55 Da | 40.40 | 63.87 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 668 | 789 | 1.1E-37 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 412 | 434 | 1.4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 481 | 499 | 0.96 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 578 | 603 | 0.14 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 507 | 535 | 3.9E-5 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 551 | 642 | 4.3E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 435 | 550 | 2.7E-21 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 507 | 540 | 3.5E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 504 | 538 | 11.454616 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 308 | - | - |
| Coils | Coil | Coil | 653 | 675 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32450.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_015622441.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q9SUU7 | Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H63 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0JIF1 | DYW_deaminase domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology