Basic Information
Locus ID:
Oco01G017720
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 23308637 | 23316256 | - | Oco01G017720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 104,829.82 Da | 43.81 | 70.52 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 809 | 852 | 2.64128E-17 | - |
| CDD | cd12108 | Hr-like | 339 | 498 | 8.73186E-30 | - |
| CDD | cd12108 | Hr-like | 39 | 115 | 7.21569E-10 | - |
| Pfam | PF14599 | Zinc-ribbon | 857 | 914 | 4.9E-24 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 337 | 499 | 1.2E-8 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 681 | 756 | 7.4E-18 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 674 | 737 | 4.32E-9 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 747 | 802 | 2.35E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 808 | 855 | 1.77E-7 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 18 | 133 | 3.0E-10 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 881 | 922 | 4.4E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 805 | 853 | 1.6E-8 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 334 | 556 | 5.8E-26 | - |
| SMART | SM00184 | ring_2 | 810 | 851 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 674 | 743 | 25.148844 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 746 | 809 | 29.816021 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 810 | 851 | 11.235273 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 593 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_015616458.1 | zinc finger protein BRUTUS [Oryza sativa Japonica Group] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | V9G2Z0 | Hemerythrin motif-containing really interesting new gene (RING)-and zinc-finger protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=OsHRZ1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology