Basic Information
Locus ID:
Oco01G016400
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 21808463 | 21811812 | + | Oco01G016400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 37,210.43 Da | 57.32 | 78.69 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 157 | 334 | 5.96896E-89 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 160 | 263 | 1.9E-13 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 160 | 289 | 2.22E-18 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 139 | 336 | 2.9E-65 | - |
| SMART | SM00232 | pad1_6 | 159 | 287 | 1.1E-10 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 160 | 288 | 26.203072 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_015621203.1 | AMSH-like ubiquitin thioesterase 2 isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | B9EYG0 | Ribosomal RNA-processing protein 40 OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_02901 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology