Basic Information
Locus ID:
Oco01G015510
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 20717073 | 20721507 | - | Oco01G015510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 72,639.82 Da | 33.79 | 89.45 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01466 | vWA_C3HC4_type | 65 | 221 | 4.02521E-61 | - |
| Pfam | PF00092 | von Willebrand factor type A domain | 66 | 228 | 4.4E-22 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 401 | 468 | 1.1E-10 | IPR032838 |
| Pfam | PF04535 | Domain of unknown function (DUF588) | 519 | 649 | 8.4E-17 | IPR006702 |
| SUPERFAMILY | SSF53300 | vWA-like | 62 | 234 | 3.06E-30 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 66 | 235 | 2.3E-37 | IPR036465 |
| SMART | SM00327 | VWA_4 | 64 | 234 | 1.5E-23 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 66 | 237 | 18.089537 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 505 | - | - |
| Coils | Coil | Coil | 371 | 398 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08050.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_052165237.1 | E3 ubiquitin-protein ligase WAV3-like [Oryza glaberrima] | 0 |
| C5XEK4 | CASP-like protein 4U1 OS=Sorghum bicolor OX=4558 GN=Sb03g029220 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1D2T6 | VWFA domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_012527 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology