Basic Information
Locus ID:
Oco01G015450
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 20652530 | 20656594 | + | Oco01G015450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 45,645.23 Da | 36.17 | 96.51 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 244 | 374 | 8.39088E-62 | - |
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 33 | 233 | 2.21646E-123 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 56 | 218 | 3.0E-41 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 257 | 365 | 1.4E-30 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 99 | 387 | 3.99E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 236 | 404 | 9.8E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 17 | 235 | 1.7E-63 | IPR027417 |
| SMART | SM00487 | ultradead3 | 50 | 247 | 4.8E-54 | IPR014001 |
| SMART | SM00490 | helicmild6 | 284 | 365 | 8.5E-35 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 31 | 59 | 10.544995 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 243 | 404 | 27.120209 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 62 | 232 | 25.642855 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 178 | 186 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_052160252.1 | eukaryotic initiation factor 4A-III homolog A [Oryza glaberrima] | 0 |
| Q5VNM3 | Eukaryotic initiation factor 4A-III homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J5V9I9 | RNA helicase OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0001g32012 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology