Basic Information
Locus ID:
Oco01G014920
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 20031378 | 20035976 | + | Oco01G014920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 90,840.63 Da | 37.38 | 91.07 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 507 | 640 | 2.42598E-15 | - |
| Pfam | PF17862 | AAA+ lid domain | 661 | 699 | 1.0E-8 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 509 | 639 | 9.0E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 119 | 374 | 1.17E-5 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 467 | 690 | 4.12E-56 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 641 | 725 | 5.4E-91 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 468 | 727 | 5.4E-91 | IPR027417 |
| SMART | SM00382 | AAA_5 | 505 | 642 | 2.7E-19 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 612 | 631 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 758 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_052134715.1 | uncharacterized protein LOC127753274 [Oryza glaberrima] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0JLC4 | AAA domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology