Basic Information
Locus ID:
Oco01G014640
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PsbP
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 19692570 | 19694304 | + | Oco01G014640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 25,701.90 Da | 59.61 | 72.48 | -0.44 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G11450.1 | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein. | 0 |
| RefSeq | XP_006646105.1 | psbP domain-containing protein 5, chloroplastic [Oryza brachyantha] | 0 |
| P82715 | PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD5 PE=1 SV=3 | 0 | |
| TrEMBL | J3L1X8 | PsbP domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36769 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17836 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031891 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g043690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30306, Sbi_jg43725 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18186 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025566 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl65781, Sgl70130 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012754, gene:ENSEOMG00000020212 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0001670, CQ.Regalona.r1.8AG0022990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253080 |
| Apiaceae | Apium graveolens | 1 | Ag11G04497 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G000890 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720913 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.3024.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G27334 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G11450.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014231m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g050620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2259 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2457 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g00450 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0641s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g19990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1381 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013687 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04932 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2345, BH02.2451, CH02.2629 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0024710, gene-QOZ80_1BG0075330 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053852 |
| Poaceae | Oryza coarctata | 2 | Oco01G014640, Oco02G014970 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g43070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G196200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603361 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G015290, Chr03G011160, Chr08G011360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G864800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG070660, gene_TRIDC7BG065200 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G504900.2, TraesCS7B02G412200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb159760_P002, Zm00001eb358300_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29230 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10660 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1441, evm.TU.LG26.228 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g11650 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.803, evm.TU.Scaffold_10_RagTag.804 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13681 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11904 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9050 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.129 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003888 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3817 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7913 |
| Salicaceae | Populus euphratica | 1 | populus_peu12819 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635704 |
| Solanaceae | Solanum chilense | 1 | SOLCI002940700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028820 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17242 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0427 |
| Zosteraceae | Zostera marina | 1 | Zosma01g05950.v3.1 |