Basic Information
Locus ID:
Oco01G014060
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 19027898 | 19028824 | - | Oco01G014060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 24,878.65 Da | 37.43 | 81.93 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 159 | 221 | 7.2701E-20 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 78 | 138 | 3.2E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 158 | 220 | 1.3E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 70 | 221 | 6.91E-38 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 153 | 227 | 7.1E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 73 | 141 | 2.1E-17 | - |
| SMART | SM00054 | efh_1 | 79 | 107 | 0.005 | IPR002048 |
| SMART | SM00054 | efh_1 | 195 | 223 | 1.7E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 159 | 187 | 6.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 116 | 144 | 0.0079 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 112 | 147 | 10.635944 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 75 | 110 | 13.453381 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 155 | 190 | 15.210791 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 191 | 226 | 13.118635 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 88 | 100 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 168 | 180 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 204 | 216 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 125 | 137 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_040385238.1 | probable calcium-binding protein CML12 [Oryza brachyantha] | 0 |
| Q5ZD81 | Probable calcium-binding protein CML12 OS=Oryza sativa subsp. japonica OX=39947 GN=CML12 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CDJ5 | Calcium-binding protein CML15 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_008145 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology