Basic Information
Locus ID:
Oco01G013920
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
phosphatase 2A 55 kDa regulatory subunit B'
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 18825019 | 18831474 | + | Oco01G013920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 56,749.90 Da | 52.68 | 76.79 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 223 | 259 | 0.18 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 50 | 504 | 1.53E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 186 | 505 | 6.4E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 47 | 185 | 3.7E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 115 | 155 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 220 | 259 | 0.61 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 367 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 42 | 77 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 310 | 58.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 22 | 511 | 6.1E-201 | IPR000009 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 115 | 129 | - | IPR018067 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 229 | 243 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 259 | 286 | 1.1E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 398 | 424 | 1.1E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 131 | 159 | 1.1E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 372 | 397 | 1.1E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 480 | 509 | 1.1E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 316 | 343 | 1.1E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 102 | 130 | 1.1E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 344 | 371 | 1.1E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 287 | 315 | 1.1E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 231 | 258 | 1.1E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 56 | 76 | 1.1E-156 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_052151981.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Oryza glaberrima] | 0 |
| A2X2K3 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica OX=39946 GN=OsI_006296 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D9YBC2 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Oryza glumipatula OX=40148 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology