halophFGD

Basic Information

Locus ID: Oco01G013310

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: LYAR-type C2HC zinc finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG01	18254659	18257664	-	Oco01G013310

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.04	50,246.11 Da	49.43	94.71	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	18	62	1.26E-5	IPR036047
SUPERFAMILY	SSF52047	RNI-like	182	341	1.45E-9	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	164	369	2.1E-13	IPR032675

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K15263 (cell growth-regulating nucleolar protein)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_052141466.1	uncharacterized protein LOC127761238 [Oryza glaberrima]	0
TrEMBL	A0A0E0FNL2	U1-type domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	3	BH02.2210, BH03.345, CH02.2359
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_1AG0022050
Poaceae	Oryza coarctata	2	Oco01G013310, Oco02G013450
Poaceae	Oryza sativa	2	LOC_Os01g40120.1, LOC_Os01g40160.1
Poaceae	Triticum aestivum	1	TraesCS6B02G453400.1